Error Running Tophat_reports

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Report Output Tracks Error · Issue #21 · infphilo/tophat · GitHub – Report Output Tracks Error. I have come across an error in the call to tophat_reports when running tophat 2.0.13 on a custom reference sequence. This error.

The error says: [FAILED] Error running tophat_reports. Tophat2 "error running tophat_reports" I am using Tophat2 (v2.1.1) to find fusions on RNA-seq files.

Tophat2 "error running tophat_reports" – Biostar: S – I am using Tophat2 (v2.1.1) to find fusions on RNA-seq files. To test the –fusion-search function, I launch the example in the manual : tophat -o tophat_outpu2 -p 8.

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May 18, 2015. The error you see indicates that one of the programs "shared libraries" (which provide functions that your program needs) is not available.

The FastQC reports showed all of. , The main Galaxy server is failing to schedule tophat's jobs. Giving error:. I have a few RNAseq samples running TopHat for.

Tophat likely bug in "tophat_reports" + "–no-discordant. – Tophat likely bug in "tophat_reports" + "–no. [ERROR]" in tophat_reports with paired-end data, you might try running the sequences again without "–no.

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